STRINGSTRING
R2601_06978 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_06978" - No annotation available in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_06978No annotation available (97 aa)    
Predicted Functional Partners:
R2601_06973
Uncharacterized protein (259 aa)
 
          0.944
R2601_06968
Uncharacterized protein (277 aa)
 
     
  0.941
R2601_22706
Aconitate hydratase (929 aa)
         
    0.900
R2601_21972
Aconitate hydratase ; Catalyzes the isomerization of citrate to isocitrate via cis-aconitate (923 aa)
         
    0.900
glcB
Malate synthase G ; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA (715 aa)
         
    0.900
R2601_07418
Uncharacterized protein (541 aa)
 
     
  0.875
R2601_07268
Putative transposase (516 aa)
 
     
  0.875
R2601_06878
Putative transposase (516 aa)
 
     
  0.875
R2601_19819
Uncharacterized protein (110 aa)
 
          0.840
R2601_06983
No annotation available (122 aa)
 
          0.824
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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