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R2601_07063 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_07063" - 27kDa outer membrane protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_0706327kDa outer membrane protein (210 aa)    
Predicted Functional Partners:
R2601_07023
Thiol-disulfide interchange protein dsbD 1 (709 aa)
 
  0.980
R2601_07053
Multicopper oxidase, putative (464 aa)
 
     
  0.661
R2601_18223
Putative periplasmic thiol-disulphide interchange protein (DsbA family) (214 aa)
 
     
  0.658
R2601_07048
Putative diheme cytochrome c-553 (305 aa)
 
          0.652
R2601_07218
Disulfide bond formation protein, DsbB family (140 aa)
 
 
  0.615
R2601_07058
Cytochrome c family protein (160 aa)
              0.591
R2601_23288
Disulfide bond formation protein, DsbB family (157 aa)
   
 
  0.528
R2601_13880
Uncharacterized protein (234 aa)
 
   
  0.527
R2601_26186
Cytochrome c-type biogenesis protein CcdA (250 aa)
         
  0.514
R2601_18358
Sulfur oxidation V protein (245 aa)
         
  0.514
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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