STRINGSTRING
R2601_07103 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_07103" - Disulfide bond formation protein, DsbB family in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_07103Disulfide bond formation protein, DsbB family (150 aa)    
Predicted Functional Partners:
R2601_17334
Uncharacterized protein (156 aa)
   
          0.600
R2601_07098
Multicopper oxidase domain protein (420 aa)
 
          0.585
R2601_07018
Cytochrome c-type biogenesis protein cycH (383 aa)
   
          0.574
R2601_16750
Uncharacterized protein (173 aa)
   
          0.546
R2601_25996
Lipoprotein, SmpA/OmlA family (139 aa)
   
          0.545
R2601_14950
Uncharacterized protein (976 aa)
   
          0.524
R2601_16900
Uncharacterized protein (166 aa)
   
          0.486
ftsQ
Cell division protein FtsQ ; Essential cell division protein (299 aa)
   
          0.478
R2601_07108
ErfK/YbiS/YcfS/YnhG (151 aa)
              0.468
R2601_08591
Uncharacterized protein (177 aa)
   
          0.458
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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