STRINGSTRING
R2601_07108 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_07108" - ErfK/YbiS/YcfS/YnhG in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_07108ErfK/YbiS/YcfS/YnhG (151 aa)    
Predicted Functional Partners:
R2601_19110
Uncharacterized protein (344 aa)
   
          0.590
R2601_06348
Putative DNA-binding protein (368 aa)
   
          0.486
R2601_07103
Disulfide bond formation protein, DsbB family (150 aa)
              0.468
mepA
Penicillin-insensitive murein endopeptidase (306 aa)
   
        0.466
R2601_25041
Uncharacterized protein (217 aa)
   
          0.460
R2601_09937
Bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase (398 aa)
              0.445
R2601_08651
Uncharacterized protein (73 aa)
   
          0.422
R2601_07498
Uncharacterized protein (309 aa)
   
          0.414
R2601_15417
Uncharacterized protein (867 aa)
   
          0.409
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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