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R2601_07148 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_07148" - Cytochrome c biogenesis protein, transmembrane region in Pelagibaca bermudensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_07148Cytochrome c biogenesis protein, transmembrane region (240 aa)    
Predicted Functional Partners:
R2601_15392
Thiol-disulfide interchange protein, putative (186 aa)
 
     
  0.850
R2601_23515
Periplasmic protein thiol-disulfide oxidoreductase, DsbE subfamily (188 aa)
 
     
  0.686
R2601_18223
Putative periplasmic thiol-disulphide interchange protein (DsbA family) (214 aa)
 
     
  0.577
R2601_07153
Uncharacterized protein (221 aa)
 
          0.561
msrB
Peptide-methionine (R)-S-oxide reductase (140 aa)
 
        0.534
R2601_07143
Uncharacterized protein (214 aa)
              0.528
R2601_15317
Thioredoxin (146 aa)
         
  0.521
R2601_14940
Thioredoxin (106 aa)
         
  0.521
R2601_23505
ABC heme exporter, inner membrane subunit CcmC (242 aa)
   
   
  0.521
R2601_17369
Uncharacterized protein (184 aa)
         
  0.515
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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