STRINGSTRING
R2601_07243 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_07243" - Cation efflux system protein in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_07243Cation efflux system protein (321 aa)    
Predicted Functional Partners:
R2601_07238
Uncharacterized protein (187 aa)
 
          0.896
R2601_07248
Uncharacterized protein (103 aa)
              0.861
R2601_07233
Co/Zn/Cd efflux system component (191 aa)
 
       
0.787
R2601_07213
DsbA-like thioredoxin domain protein (219 aa)
 
          0.664
R2601_06843
Uncharacterized protein (283 aa)
   
   
    0.635
R2601_07218
Disulfide bond formation protein, DsbB family (140 aa)
 
          0.620
R2601_18633
Ribonucleoside-diphosphate reductase ; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides (707 aa)
   
   
  0.514
R2601_10309
Ribonucleoside-diphosphate reductase, putative (762 aa)
   
   
  0.514
R2601_24789
Ribonucleotide-diphosphate reductase alpha subunit (1215 aa)
   
        0.513
R2601_07188
Uncharacterized protein (260 aa)
   
 
  0.511
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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