STRINGSTRING
R2601_07308 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_07308" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_07308Uncharacterized protein (333 aa)    
Predicted Functional Partners:
R2601_07313
Conjugal transfer protein (708 aa)
     
  0.996
R2601_07303
VirB10 transmembrane type IV secretion protein (144 aa)
 
     
  0.959
R2601_09068
Putative Flp pilus assembly protein TadC (323 aa)
 
     
  0.873
R2601_07318
Uncharacterized protein (515 aa)
              0.869
R2601_06838
Transport secretion system IV, VirD4 protein (641 aa)
     
  0.829
R2601_09063
Type II/IV secretion system protein, TadC subfamily (321 aa)
   
          0.772
R2601_09058
Type II/IV secretion system protein, TadA subfamily (489 aa)
 
   
 
0.686
topA
DNA topoisomerase I ; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5’-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3’-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] (906 aa)
            0.668
R2601_09043
Bacterial type II/III secretion system protein (471 aa)
   
          0.634
R2601_09053
ATPase, putative (410 aa)
   
          0.633
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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