STRINGSTRING
R2601_07438 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_07438" - Nickase in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_07438Nickase (393 aa)    
Predicted Functional Partners:
R2601_07443
Uncharacterized protein (176 aa)
              0.863
R2601_07303
VirB10 transmembrane type IV secretion protein (144 aa)
 
          0.706
R2601_07313
Conjugal transfer protein (708 aa)
 
     
  0.675
R2601_06838
Transport secretion system IV, VirD4 protein (641 aa)
 
     
  0.615
R2601_07468
Conjugal transfer antirestriction protein (293 aa)
 
          0.614
R2601_07433
Uncharacterized protein (33 aa)
              0.507
R2601_07458
Cobyrinic acid a,c-diamide synthase (246 aa)
              0.477
R2601_07448
Uncharacterized protein (95 aa)
              0.460
R2601_07453
Chromosome partitioning protein, ParB (346 aa)
              0.459
R2601_07463
Uncharacterized protein (56 aa)
              0.447
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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