STRINGSTRING
R2601_07543 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_07543" - DNA repair protein RadC in Pelagibaca bermudensis
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
R2601_07543DNA repair protein RadC (168 aa)    
Predicted Functional Partners:
mutL
DNA mismatch repair protein MutL ; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a "molecular matchmaker", a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex (621 aa)
 
   
  0.866
mutS
DNA mismatch repair protein MutS ; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity (874 aa)
 
     
  0.863
R2601_07548
Uncharacterized protein (76 aa)
              0.718
R2601_17819
DNA processing protein DprA, putative (375 aa)
   
   
  0.700
R2601_15447
DNA polymerase I (935 aa)
     
 
  0.651
pheT
Phenylalanyl-tRNA synthetase beta subunit (798 aa)
 
 
 
  0.616
coaE
Dephosphocoenzyme A kinase ; Catalyzes the phosphorylation of the 3’-hydroxyl group of dephosphocoenzyme A to form coenzyme A (196 aa)
 
          0.613
R2601_09952
Competence protein ComM (504 aa)
 
   
  0.585
R2601_13249
FolC bifunctional protein (425 aa)
 
     
  0.573
fpg
DNA-(apurinic or apyrimidinic site) lyase MutM ; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3’- and 5’-phosphates (283 aa)
     
 
  0.571
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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