STRINGSTRING
R2601_07588 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_07588" - Transposase in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_07588Transposase (445 aa)    
Predicted Functional Partners:
R2601_07593
Transposase (289 aa)
          0.979
R2601_07493
No annotation available (274 aa)
          0.863
R2601_07278
Transposion helper protein, ATP-binding protein (274 aa)
          0.863
R2601_24395
Transposion helper protein, ATP-binding protein (255 aa)
          0.862
R2601_15812
Transposase (241 aa)
 
          0.822
R2601_15807
Transposion helper protein, ATP-binding protein (140 aa)
          0.801
R2601_07598
Uncharacterized protein (186 aa)
              0.681
R2601_07583
Uncharacterized protein (78 aa)
              0.660
R2601_25586
Uncharacterized protein (211 aa)
   
          0.477
R2601_25576
Uncharacterized protein (111 aa)
   
          0.467
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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