STRINGSTRING
R2601_07668 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_07668" - TRAP dicarboxylate transporter, DctM subunit in Pelagibaca bermudensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_07668TRAP dicarboxylate transporter, DctM subunit (427 aa)    
Predicted Functional Partners:
R2601_07673
TRAP transporter, transmembrane protein, putative (183 aa)
 
   
    0.975
R2601_07678
TRAP transporter, periplasmic protein (347 aa)
 
   
    0.974
R2601_00030
Putative ABC transporter periplasmic solute-binding protein (325 aa)
 
  0.907
R2601_00590
C4-dicarboxylate transport system (C4-dicarboxylate-binding protein) (321 aa)
 
  0.906
R2601_17439
Bacterial extracellular solute-binding protein, family 7 (323 aa)
 
 
  0.892
R2601_13314
Probable C4-dicarboxylate transport system, substrate-binding protein (333 aa)
 
  0.890
R2601_06038
C4-dicarboxylate transport system C4-dicarboxylate-binding protein (322 aa)
 
  0.884
R2601_07663
Uncharacterized protein (224 aa)
 
          0.878
R2601_03268
Dicarboxylate transporter DctP subunit family protein (322 aa)
 
  0.874
R2601_01908
Putative signal peptide protein (193 aa)
 
 
  0.860
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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