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R2601_07673 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_07673" - TRAP transporter, transmembrane protein, putative in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_07673TRAP transporter, transmembrane protein, putative (183 aa)    
Predicted Functional Partners:
R2601_07678
TRAP transporter, periplasmic protein (347 aa)
 
   
    0.998
R2601_07668
TRAP dicarboxylate transporter, DctM subunit (427 aa)
 
   
    0.975
R2601_07663
Uncharacterized protein (224 aa)
 
          0.956
R2601_06123
Putative extracellular solute-binding protein (347 aa)
 
   
    0.942
R2601_07683
UPF0317 protein R2601_07683 (271 aa)
 
          0.900
R2601_07658
Amidase (420 aa)
              0.827
R2601_07653
Allophanate hydrolase family protein (250 aa)
              0.826
R2601_07648
Uncharacterized protein (338 aa)
              0.824
R2601_07688
Transcriptional regulatory protein (293 aa)
 
          0.639
R2601_06113
Uncharacterized protein (433 aa)
 
   
    0.627
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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