STRINGSTRING
R2601_07698 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_07698" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_07698Uncharacterized protein (234 aa)    
Predicted Functional Partners:
R2601_07703
AAA ATPase (434 aa)
              0.859
R2601_25446
Endonuclease/exonuclease/phosphatase family protein (295 aa)
   
          0.573
R2601_15677
Cytochrome c (144 aa)
   
          0.533
R2601_14990
Acetyltransferase, GNAT family protein (161 aa)
   
          0.480
R2601_07713
Uncharacterized protein (2570 aa)
              0.470
R2601_07708
Uncharacterized protein (577 aa)
              0.470
R2601_25341
Membrane protein (293 aa)
   
          0.420
R2601_07718
Uncharacterized protein (635 aa)
              0.420
R2601_20301
Glycoside hydrolase, family 25 (283 aa)
   
          0.412
R2601_25336
Uncharacterized protein (276 aa)
   
          0.410
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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