STRINGSTRING
R2601_07786 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_07786" - N utilization substance protein B homolog in Pelagibaca bermudensis
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_07786N utilization substance protein B homolog ; Involved in the transcription termination process (163 aa)    
Predicted Functional Partners:
R2601_07781
6,7-dimethyl-8-ribityllumazine synthase ; Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin (183 aa)
   
   
  0.945
rpsJ
30S ribosomal protein S10 ; Involved in the binding of tRNA to the ribosomes (102 aa)
       
 
  0.923
R2601_07776
Bifunctional GTP cyclohydrolase II/3,4-dihydroxy-2butanone-4-phosphate synthase (194 aa)
   
 
  0.904
R2601_10414
Riboflavin biosynthesis protein RibD ; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5’-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5’-phosphate (350 aa)
   
   
  0.783
R2601_14950
Uncharacterized protein (976 aa)
 
          0.724
R2601_24744
Uncharacterized protein (615 aa)
 
   
  0.710
R2601_18303
Uncharacterized protein (258 aa)
   
          0.670
xseA
Exodeoxyribonuclease VII large subunit ; Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides (510 aa)
 
   
  0.668
R2601_07771
Uncharacterized protein (53 aa)
              0.665
R2601_23388
Uncharacterized protein (158 aa)
   
          0.663
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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