STRINGSTRING
R2601_07956 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_07956" - Amidophosphoribosyl transferase-like protein in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_07956Amidophosphoribosyl transferase-like protein (295 aa)    
Predicted Functional Partners:
R2601_12990
Glutamate synthase, large subunit (1537 aa)
   
  0.998
R2601_07946
Glutamate synthase family protein (434 aa)
 
  0.995
R2601_07951
FwdC/FmdC family protein (237 aa)
 
  0.995
R2601_07941
Glutamine synthetase III (438 aa)
 
 
  0.966
R2601_12975
Glutamate synthase, small subunit (478 aa)
   
  0.937
R2601_15747
Glutamate synthase family protein (498 aa)
   
  0.932
gcvP
Glycine dehydrogenase (aminomethyl-transferring) ; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein (948 aa)
     
 
  0.917
R2601_24724
Glutamine synthetase (468 aa)
   
 
  0.907
R2601_16160
Glutamine synthetase (477 aa)
   
 
  0.906
R2601_11836
Pyridine nucleotide-disulphide oxidoreductase family protein (426 aa)
   
  0.903
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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