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R2601_07961 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_07961" - DNA-binding protein, putative in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_07961DNA-binding protein, putative (212 aa)    
Predicted Functional Partners:
R2601_07956
Amidophosphoribosyl transferase-like protein (295 aa)
 
          0.872
R2601_07951
FwdC/FmdC family protein (237 aa)
 
          0.872
R2601_07946
Glutamate synthase family protein (434 aa)
 
          0.830
R2601_07941
Glutamine synthetase III (438 aa)
 
          0.789
R2601_07981
Probable aminomethyltransferase protein (787 aa)
 
          0.768
R2601_21717
Acetyl-coenzyme A synthetase (524 aa)
     
      0.726
R2601_07986
Flavin-containing monooxygenase (449 aa)
 
          0.680
R2601_21887
DNA binding protein, putative (189 aa)
   
          0.637
R2601_12990
Glutamate synthase, large subunit (1537 aa)
              0.554
R2601_07966
Alcohol dehydrogenase, iron-containing (383 aa)
              0.544
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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