STRINGSTRING
R2601_07976 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_07976" - Putative choline kinase protein in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_07976Putative choline kinase protein (292 aa)    
Predicted Functional Partners:
R2601_07971
Probable glycine cleavage system T protein (811 aa)
 
          0.960
R2601_07981
Probable aminomethyltransferase protein (787 aa)
 
          0.877
R2601_07986
Flavin-containing monooxygenase (449 aa)
              0.859
R2601_07966
Alcohol dehydrogenase, iron-containing (383 aa)
              0.628
R2601_24390
Putative MutT/nudix family protein (173 aa)
   
          0.545
R2601_18273
Uncharacterized protein (455 aa)
   
          0.522
R2601_17554
Uncharacterized protein (242 aa)
   
          0.477
R2601_07996
Choline dehydrogenase (513 aa)
              0.465
R2601_07991
Homoserine O-acetyltransferase (339 aa)
              0.465
R2601_19477
Uncharacterized protein (597 aa)
   
          0.455
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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