STRINGSTRING
R2601_08136 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_08136" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_08136Uncharacterized protein (486 aa)    
Predicted Functional Partners:
R2601_08141
Renal dipeptidase family protein (353 aa)
              0.595
R2601_24549
Uncharacterized protein (171 aa)
   
          0.587
R2601_19512
Uncharacterized protein (130 aa)
   
          0.524
R2601_08131
Phosphonates import ATP-binding protein PhnC ; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system (272 aa)
              0.510
R2601_15707
ABC-type dipeptide transport system, periplasmic component (535 aa)
   
          0.507
R2601_08011
Ammonium transporter family protein (93 aa)
   
          0.495
R2601_12453
Possible TolA protein (379 aa)
   
          0.487
R2601_25341
Membrane protein (293 aa)
   
          0.486
R2601_05168
Putative integral membrane protein (221 aa)
   
          0.482
R2601_05173
Uncharacterized protein (535 aa)
   
          0.464
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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