STRINGSTRING
R2601_08201 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_08201" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_08201Uncharacterized protein (320 aa)    
Predicted Functional Partners:
R2601_24739
Anthranilate synthase component I (504 aa)
 
  0.980
R2601_20946
Para-aminobenzoate synthase component I (384 aa)
 
  0.975
trpF
N-(5’-phosphoribosyl)anthranilate isomerase (223 aa)
 
 
  0.961
trpA
Tryptophan synthase alpha chain ; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3- phosphate (263 aa)
 
 
  0.941
R2601_08196
Nitrate reductase large subunit protein (876 aa)
 
     
  0.939
trpB
Tryptophan synthase beta chain ; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine (408 aa)
 
 
  0.926
trpC
Indole-3-glycerol phosphate synthase (267 aa)
 
 
  0.926
R2601_08191
Nitrite reductase small subunit (110 aa)
              0.887
R2601_25211
Anthranilate synthase component II (193 aa)
 
  0.877
R2601_23318
Inosine-5’-monophosphate dehydrogenase (482 aa)
   
 
  0.845
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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