STRINGSTRING
rpiA protein (Pelagibaca bermudensis) - STRING interaction network
"rpiA" - Phosphoriboisomerase A in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpiAPhosphoriboisomerase A ; Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate (260 aa)    
Predicted Functional Partners:
R2601_00900
Transketolase ; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate (668 aa)
 
  0.991
R2601_24544
Transketolase (672 aa)
 
  0.991
R2601_17409
Transketolase ; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate (661 aa)
   
  0.990
R2601_17414
Phosphoribulokinase (290 aa)
         
  0.980
R2601_00855
Putative transketolase alpha subunit protein (282 aa)
       
  0.978
R2601_00850
Putative transketolase beta subunit protein (344 aa)
       
  0.978
R2601_27318
Transketolase, putative (798 aa)
       
    0.977
R2601_20781
Ribose kinase protein (296 aa)
 
 
  0.904
R2601_17374
Ribulose-phosphate 3-epimerase (233 aa)
   
  0.899
R2601_14755
Ribokinase (292 aa)
 
 
  0.866
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
Server load: low (10%) [HD]