STRINGSTRING
R2601_08361 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_08361" - Putative DNA-binding protein in Pelagibaca bermudensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_08361Putative DNA-binding protein (184 aa)    
Predicted Functional Partners:
R2601_08356
Probable acetyltransferase protein (175 aa)
 
        0.967
R2601_14360
NAD(+) synthase (552 aa)
       
  0.824
R2601_26716
Helix-turn-helix motif (152 aa)
   
          0.777
R2601_05983
HipA protein (439 aa)
     
 
  0.736
R2601_20611
Uncharacterized protein (343 aa)
   
          0.603
R2601_08741
Apolipoprotein N-acyltransferase ; Transfers the fatty acyl group on membrane lipoproteins (502 aa)
 
     
  0.523
pdhA
Pyruvate dehydrogenase E1 component subunit alpha ; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) (340 aa)
              0.522
R2601_07178
Apolipoprotein N-acyltransferase ; Transfers the fatty acyl group on membrane lipoproteins (523 aa)
 
     
  0.520
trmB
tRNA(m7G46)-methyltransferase ; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA (237 aa)
 
          0.519
R2601_02168
Haloalkanoic acid dehalogenase (221 aa)
   
   
  0.515
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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