STRINGSTRING
R2601_08466 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_08466" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_08466Uncharacterized protein (77 aa)    
Predicted Functional Partners:
R2601_08471
Portal protein, HK97 family (399 aa)
 
          0.882
R2601_08461
Phage prohead protease, HK97 family protein (180 aa)
 
          0.789
R2601_08451
Uncharacterized protein (197 aa)
 
          0.758
R2601_23435
Lipoprotein, putative (168 aa)
   
          0.752
R2601_18173
Uncharacterized protein (447 aa)
   
          0.744
R2601_17599
Uncharacterized protein (225 aa)
   
          0.732
R2601_17799
Uncharacterized protein (58 aa)
   
          0.724
R2601_08456
Major capsid protein, HK97 family (393 aa)
 
          0.722
R2601_25986
Uncharacterized protein (322 aa)
   
          0.718
R2601_21802
Uncharacterized protein (117 aa)
   
          0.713
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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