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R2601_08536 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_08536" - Protoporphyrinogen oxidase in Pelagibaca bermudensis
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_08536Protoporphyrinogen oxidase (180 aa)    
Predicted Functional Partners:
R2601_14875
Protoheme ferro-lyase ; Catalyzes the ferrous insertion into protoporphyrin IX (353 aa)
       
  0.977
R2601_10519
Coproporphyrinogen-III oxidase (442 aa)
   
   
  0.795
R2601_10759
Succinate dehydrogenase flavoprotein subunit (601 aa)
       
    0.717
R2601_09183
3-ketosteroid dehydrogenase, putative (454 aa)
   
 
    0.677
R2601_11119
Coproporphyrinogen oxidase (298 aa)
         
  0.651
R2601_01548
Putative dehydrogenase (569 aa)
       
    0.635
R2601_08541
Uncharacterized protein (258 aa)
              0.602
R2601_15792
Phage integrase (347 aa)
   
          0.494
R2601_08546
Uncharacterized protein (120 aa)
              0.469
R2601_26231
Trk system potassium uptake protein TrkH (504 aa)
              0.451
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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