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R2601_08556 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_08556" - ABC transporter, ATP-binding/permease protein in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_08556ABC transporter, ATP-binding/permease protein (602 aa)    
Predicted Functional Partners:
R2601_08561
LysM domain protein (429 aa)
              0.678
R2601_08566
Cytokinin riboside 5’-monophosphate phosphoribohydrolase (183 aa)
   
        0.638
R2601_12196
ABC transporter, ATP binding/permease protein (599 aa)
 
0.610
R2601_02353
ABC multidrug efflux transporter, fused ATPase and inner membrane subunits (566 aa)
 
0.591
R2601_17654
Efflux ABC transporter, transmembrane ATP-binding protein (582 aa)
 
0.587
R2601_14845
ABC multidrug efflux pump, fused ATPase and inner membrane subunits (615 aa)
 
0.564
R2601_14840
ABC transporter, transmembrane ATP-binding protein (614 aa)
 
0.562
R2601_08858
Iron-sulfur cluster carrier protein ; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP (354 aa)
   
 
  0.547
R2601_26286
Aromatic-rich family protein (151 aa)
   
          0.546
psd
Phosphatidylserine decarboxylase proenzyme ; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer) (226 aa)
 
        0.532
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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