STRINGSTRING
R2601_08561 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_08561" - LysM domain protein in Pelagibaca bermudensis
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_08561LysM domain protein (429 aa)    
Predicted Functional Partners:
R2601_08566
Cytokinin riboside 5’-monophosphate phosphoribohydrolase (183 aa)
              0.751
R2601_08556
ABC transporter, ATP-binding/permease protein (602 aa)
              0.678
topA
DNA topoisomerase I ; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5’-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3’-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] (906 aa)
              0.554
R2601_26926
Uncharacterized protein (1097 aa)
   
          0.532
R2601_17819
DNA processing protein DprA, putative (375 aa)
   
   
  0.530
R2601_17883
5’-methylthioadenosine phosphorylase (291 aa)
   
   
    0.519
R2601_21016
Uncharacterized protein (161 aa)
     
   
  0.501
R2601_15070
HemY domain protein (511 aa)
   
          0.493
R2601_12191
Uncharacterized protein (160 aa)
     
        0.467
R2601_11299
Uncharacterized protein (141 aa)
   
          0.465
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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