STRINGSTRING
R2601_08566 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_08566" - Cytokinin riboside 5'-monophosphate phosphoribohydrolase in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_08566Cytokinin riboside 5’-monophosphate phosphoribohydrolase (183 aa)    
Predicted Functional Partners:
R2601_08371
Dihydrolipoamide acetyltransferase (461 aa)
   
 
    0.862
R2601_10834
2-oxoglutarate dehydrogenase complex component E2 ; The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2) (512 aa)
 
 
    0.816
R2601_10854
Dihydrolipoyl dehydrogenase (464 aa)
   
 
    0.788
R2601_10939
Branched-chain amino acid aminotransferase (289 aa)
       
    0.774
R2601_26906
Dihydrolipoyl dehydrogenase (464 aa)
   
 
    0.760
R2601_08561
LysM domain protein (429 aa)
              0.751
prmC
Protein-glutamine N-methyltransferase PrmC ; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif (282 aa)
 
        0.750
R2601_00675
Zinc-containing alcohol dehydrogenase superfamily protein (333 aa)
 
 
    0.699
R2601_19240
Alcohol dehydrogenase, zinc-containing (323 aa)
 
 
    0.698
R2601_10829
2-oxoglutarate dehydrogenase, E1 component (990 aa)
 
 
    0.689
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
Server load: low (6%) [HD]