STRINGSTRING
R2601_08581 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_08581" - Beta-lactamase related protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_08581Beta-lactamase related protein (388 aa)    
Predicted Functional Partners:
R2601_12785
Transcriptional regulator TetR family protein (206 aa)
   
          0.657
R2601_08586
Signal peptidase II ; This protein specifically catalyzes the removal of signal peptides from prolipoproteins (161 aa)
         
  0.656
pepA
Leucyl aminopeptidase ; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides (491 aa)
       
    0.626
R2601_13659
Cytosol aminopeptidase family protein (460 aa)
       
    0.626
trmJ
tRNA Cm32/Um32 methyltransferase ; Catalyzes the formation of 2’O-methylated cytidine (Cm32) or 2’O-methylated uridine (Um32) at position 32 in tRNA (247 aa)
 
          0.546
dapA
4-hydroxy-tetrahydrodipicolinate synthase ; Catalyzes the condensation of (S)-aspartate-beta- semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA) (286 aa)
              0.546
R2601_08591
Uncharacterized protein (177 aa)
              0.532
R2601_23765
Glyoxalase family protein (126 aa)
   
          0.505
R2601_26206
Penicillin amidase family protein (822 aa)
   
   
    0.496
R2601_15885
Uncharacterized protein (295 aa)
   
          0.472
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
Server load: low (7%) [HD]