STRINGSTRING
R2601_08611 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_08611" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_08611Uncharacterized protein (582 aa)    
Predicted Functional Partners:
purH
Bifunctional purine biosynthesis protein PurH (529 aa)
              0.842
R2601_08616
Ribosomal RNA small subunit methyltransferase B, putative (420 aa)
 
          0.784
R2601_16570
Uncharacterized protein (216 aa)
   
          0.763
R2601_25456
Uncharacterized protein (173 aa)
   
          0.759
R2601_26926
Uncharacterized protein (1097 aa)
   
          0.755
R2601_18228
Uncharacterized protein (169 aa)
   
          0.747
R2601_09977
Uncharacterized protein (396 aa)
   
          0.747
R2601_17624
Uncharacterized protein (445 aa)
   
          0.743
R2601_26056
Uncharacterized protein (335 aa)
   
          0.740
R2601_14950
Uncharacterized protein (976 aa)
   
          0.739
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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