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R2601_08616 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_08616" - Ribosomal RNA small subunit methyltransferase B, putative in Pelagibaca bermudensis
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second shell of interactors
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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Score
R2601_08616Ribosomal RNA small subunit methyltransferase B, putative (420 aa)    
Predicted Functional Partners:
R2601_08706
30S ribosomal protein S1 ; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence (553 aa)
   
 
  0.940
ftsJ
rRNA (uridine-2’-O-)-methyltransferase ; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2’-O position of the ribose in the fully assembled 50S ribosomal subunit (238 aa)
   
 
  0.887
ksgA
S-adenosylmethionine-6-N’, N’-adenosyl(rRNA) dimethyltransferase ; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3’-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits (278 aa)
 
   
  0.854
R2601_14850
23S rRNA (Uracil-5-)-methyltransferase rumA (407 aa)
   
  0.843
guaA
Glutamine amidotransferase ; Catalyzes the synthesis of GMP from XMP (521 aa)
   
        0.837
rpmD
50S ribosomal protein L30 (62 aa)
     
 
  0.824
rplJ
50S ribosomal protein L10 ; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors (164 aa)
   
      0.811
truB
tRNA-uridine isomerase ; Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs (304 aa)
   
 
  0.804
R2601_08611
Uncharacterized protein (582 aa)
 
          0.784
purH
Bifunctional purine biosynthesis protein PurH (529 aa)
   
        0.749
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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