STRINGSTRING
R2601_08636 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_08636" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_08636Uncharacterized protein (248 aa)    
Predicted Functional Partners:
rbfA
Ribosome-binding factor A ; Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5’-terminal helix region of 16S rRNA (131 aa)
              0.887
R2601_08626
4-hydroxy-tetrahydrodipicolinate reductase ; Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate (226 aa)
              0.680
R2601_08646
Inositol monophosphatase family protein (260 aa)
              0.634
R2601_08641
PmbA (448 aa)
              0.634
R2601_20301
Glycoside hydrolase, family 25 (283 aa)
   
          0.533
R2601_08988
Nuclease (SNase-like) protein (205 aa)
     
        0.487
R2601_09225
Uncharacterized protein (241 aa)
   
          0.451
R2601_12006
Uncharacterized protein (507 aa)
   
          0.447
R2601_19270
Flagellin ; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella (432 aa)
   
          0.432
R2601_24714
Uncharacterized protein (270 aa)
   
          0.427
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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