STRINGSTRING
R2601_08676 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_08676" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_08676Uncharacterized protein (276 aa)    
Predicted Functional Partners:
guaA
Glutamine amidotransferase ; Catalyzes the synthesis of GMP from XMP (521 aa)
       
    0.911
R2601_18830
Uncharacterized protein (798 aa)
 
        0.905
R2601_09455
Uncharacterized protein (317 aa)
        0.882
R2601_09460
Uncharacterized protein (474 aa)
 
        0.877
R2601_09445
Uncharacterized protein (240 aa)
 
        0.789
R2601_12735
Uncharacterized protein (91 aa)
 
        0.705
R2601_10739
Transglutaminase-like protein (258 aa)
 
          0.691
R2601_12655
Ser/Thr protein phosphatase/nucleotidase, putative (519 aa)
       
    0.607
R2601_09450
Uncharacterized protein (276 aa)
 
       
0.600
trpF
N-(5’-phosphoribosyl)anthranilate isomerase (223 aa)
              0.599
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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