STRINGSTRING
ybeY protein (Pelagibaca bermudensis) - STRING interaction network
"ybeY" - Endoribonuclease YbeY in Pelagibaca bermudensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybeYEndoribonuclease YbeY ; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3’ terminus of the 16S rRNA (160 aa)    
Predicted Functional Partners:
R2601_08756
PhoH family protein (326 aa)
   
 
  0.885
R2601_18243
Cytidine deaminase (130 aa)
            0.851
R2601_08741
Apolipoprotein N-acyltransferase ; Transfers the fatty acyl group on membrane lipoproteins (502 aa)
   
   
  0.792
metK
Methionine adenosyltransferase ; Catalyzes the formation of S-adenosylmethionine from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme (392 aa)
 
          0.726
R2601_08746
Hemolysin, putative (271 aa)
   
        0.703
R2601_14120
Protein translocase subunit SecA ; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane (915 aa)
 
          0.679
miaB
tRNA-i(6)A37 methylthiotransferase ; Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine (435 aa)
 
     
  0.647
R2601_07178
Apolipoprotein N-acyltransferase ; Transfers the fatty acyl group on membrane lipoproteins (523 aa)
   
   
  0.645
R2601_11209
Protease, putative (207 aa)
 
          0.625
trmB
tRNA(m7G46)-methyltransferase ; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA (237 aa)
         
  0.625
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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