STRINGSTRING
R2601_08766 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_08766" - OmpA family protein in Pelagibaca bermudensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_08766OmpA family protein (194 aa)    
Predicted Functional Partners:
R2601_08761
Lipoprotein, putative (101 aa)
 
          0.959
tolB
Protein TolB ; Involved in the TonB-independent uptake of proteins (446 aa)
   
 
  0.809
R2601_16665
OmpA domain protein (310 aa)
   
          0.769
R2601_22157
OmpA/MotB domain protein (248 aa)
   
          0.761
R2601_09048
OmpA family protein (221 aa)
   
          0.742
R2601_22117
Possible outer membrane protein, OmpA family (452 aa)
 
  0.722
R2601_16020
Uncharacterized protein (465 aa)
 
  0.719
R2601_22192
Uncharacterized protein (360 aa)
   
          0.686
R2601_18058
F-ATPase subunit beta ; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits (463 aa)
   
 
    0.685
R2601_13970
F-ATPase subunit beta ; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits (474 aa)
   
 
    0.685
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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