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R2601_08913 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_08913" - Transcriptional regulator, CarD family protein in Pelagibaca bermudensis
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_08913Transcriptional regulator, CarD family protein (169 aa)    
Predicted Functional Partners:
R2601_08928
Helicase, putative (989 aa)
 
          0.763
R2601_15145
Uncharacterized protein (166 aa)
   
          0.739
R2601_08918
Iron-sulfur cluster-binding protein (112 aa)
 
          0.709
R2601_08923
S4 domain protein (124 aa)
              0.633
rpoB
Transcriptase subunit beta ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1378 aa)
       
      0.618
R2601_21547
Penicillin-binding protein 1A (845 aa)
   
          0.586
R2601_18303
Uncharacterized protein (258 aa)
   
          0.574
murC
UDP-N-acetylmuramoyl-L-alanine synthetase ; Cell wall formation (478 aa)
   
          0.567
ispDF
Bifunctional enzyme IspD/IspF ; Bifunctional enzyme that catalyzes the formation of 4- diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl- D-erythritol 4-phosphate (MEP) (IspD), and catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2- phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4- cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) (IspF) (378 aa)
              0.554
R2601_22611
General stress protein CTC ; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance (178 aa)
 
          0.541
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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