STRINGSTRING
R2601_08928 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_08928" - Helicase, putative in Pelagibaca bermudensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_08928Helicase, putative (989 aa)    
Predicted Functional Partners:
R2601_08923
S4 domain protein (124 aa)
 
 
      0.920
R2601_08933
Uncharacterized protein (169 aa)
              0.823
R2601_19150
ATP-dependent helicase HrpB (814 aa)
     
  0.781
ftsJ
rRNA (uridine-2’-O-)-methyltransferase ; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2’-O position of the ribose in the fully assembled 50S ribosomal subunit (238 aa)
   
 
  0.776
rpmD
50S ribosomal protein L30 (62 aa)
     
  0.775
R2601_08918
Iron-sulfur cluster-binding protein (112 aa)
              0.764
R2601_08706
30S ribosomal protein S1 ; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence (553 aa)
   
 
  0.763
R2601_08913
Transcriptional regulator, CarD family protein (169 aa)
 
          0.763
R2601_25526
Cold shock family protein (68 aa)
   
  0.762
R2601_24779
Cold shock DNA-binding domain protein (180 aa)
   
  0.762
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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