STRINGSTRING
R2601_08933 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_08933" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_08933Uncharacterized protein (169 aa)    
Predicted Functional Partners:
R2601_08928
Helicase, putative (989 aa)
              0.823
R2601_08923
S4 domain protein (124 aa)
              0.823
R2601_08943
Putative Esterase/lipase/thioesterase (323 aa)
              0.688
R2601_08938
Sterol carrier family protein (96 aa)
              0.669
R2601_08918
Iron-sulfur cluster-binding protein (112 aa)
              0.638
R2601_26031
2’-deoxycytidine 5’-triphosphate deaminase (358 aa)
 
          0.633
R2601_18438
Uncharacterized protein (119 aa)
   
          0.615
R2601_25626
Predicted hydrolase or acyltransferase (Alpha/beta hydrolase) (316 aa)
 
          0.567
R2601_05663
Uncharacterized protein (146 aa)
   
          0.558
R2601_08953
DNA ligase (530 aa)
              0.541
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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