STRINGSTRING
R2601_08953 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_08953" - DNA ligase in Pelagibaca bermudensis
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_08953DNA ligase (530 aa)    
Predicted Functional Partners:
R2601_08948
Uncharacterized protein (339 aa)
  0.998
R2601_14420
DNA polymerase III subunit beta ; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3’ to 5’ exonuclease activity. The beta chain is required for initiation of replication once it is clamped onto DNA, it slides freely (bidirectional and ATP- independent) along duplex DNA (372 aa)
     
  0.961
R2601_15447
DNA polymerase I (935 aa)
   
  0.884
R2601_12383
ATP-dependent helicase, DEAD/DEAH box family protein (807 aa)
 
          0.871
R2601_12393
Uncharacterized protein (224 aa)
 
          0.868
R2601_25726
Exonuclease SbcD (377 aa)
     
  0.828
ligA
Polydeoxyribonucleotide synthase [NAD(+)] ; DNA ligase that catalyzes the formation of phosphodiester linkages between 5’-phosphoryl and 3’-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA (757 aa)
     
 
  0.824
R2601_24789
Ribonucleotide-diphosphate reductase alpha subunit (1215 aa)
     
   
  0.764
R2601_18633
Ribonucleoside-diphosphate reductase ; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides (707 aa)
     
   
  0.764
R2601_10309
Ribonucleoside-diphosphate reductase, putative (762 aa)
     
   
  0.764
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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