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R2601_08973 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_08973" - C4-type zinc finger protein, DksA/TraR family in Pelagibaca bermudensis
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second shell of interactors
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Cooccurence
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[Homology]
Score
R2601_08973C4-type zinc finger protein, DksA/TraR family (89 aa)    
Predicted Functional Partners:
rpoC
Transcriptase subunit beta’ ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1418 aa)
       
 
  0.676
R2601_08978
Glutathione peroxidase (171 aa)
              0.633
infA
Translation initiation factor IF-1 ; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex (72 aa)
         
  0.487
R2601_08586
Signal peptidase II ; This protein specifically catalyzes the removal of signal peptides from prolipoproteins (161 aa)
   
   
  0.471
R2601_07183
Signal peptidase II ; This protein specifically catalyzes the removal of signal peptides from prolipoproteins (157 aa)
   
   
  0.471
R2601_11901
Probable cobalamin synthesis protein, P47K family (406 aa)
   
        0.471
R2601_05883
CobW (351 aa)
   
        0.471
ileS
Isoleucyl-tRNA synthetase ; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as ’pretransfer’ editing and involves the hydrolysis of activated Val-AMP. The other activity is designated ’posttransfer’ editing and involves deacylation of mischarged Val-tRNA(Ile) (996 aa)
         
  0.470
sfsA
Sugar fermentation stimulation protein homolog (235 aa)
   
        0.469
rlmH
rRNA (pseudouridine-N3-)-methyltransferase RlmH ; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA (156 aa)
   
        0.462
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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