STRINGSTRING
R2601_08988 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_08988" - Nuclease in Pelagibaca bermudensis
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
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Experiments
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Textmining
[Homology]
Score
R2601_08988Nuclease (SNase-like) protein (205 aa)    
Predicted Functional Partners:
secY
Protein translocase subunit SecY ; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently (447 aa)
     
        0.649
R2601_25566
Uncharacterized protein (98 aa)
   
          0.611
R2601_08983
Uncharacterized protein (81 aa)
              0.555
R2601_12990
Glutamate synthase, large subunit (1537 aa)
              0.546
R2601_09003
Peptidase, M16 family protein (420 aa)
   
        0.528
R2601_09008
Ribosomal-protein-alanine acetyltransferase, putative (194 aa)
              0.516
R2601_08998
Threonine synthase (463 aa)
              0.514
R2601_08993
SURF1 family protein (225 aa)
              0.514
R2601_08636
Uncharacterized protein (248 aa)
     
        0.487
R2601_26531
Probable sorbitol/mannitol transport inner membrane protein (276 aa)
         
  0.456
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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