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R2601_09023 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_09023" - Transglycosylase, Slt family protein in Pelagibaca bermudensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_09023Transglycosylase, Slt family protein (274 aa)    
Predicted Functional Partners:
R2601_21046
Probable glycosyltransferase protein (302 aa)
   
          0.763
R2601_15447
DNA polymerase I (935 aa)
     
 
  0.638
R2601_11444
Flagellar motor protein (634 aa)
 
          0.633
fliG
Flagellar motor switch protein G (354 aa)
 
          0.583
R2601_06593
Probable replication protein B (309 aa)
 
   
  0.552
R2601_21987
Possible flagellar motor switch protein (FliG) (350 aa)
 
          0.536
R2601_09078
Lipoprotein, putative (286 aa)
 
          0.509
R2601_11669
Ribonuclease HI (130 aa)
     
      0.507
fpg
DNA-(apurinic or apyrimidinic site) lyase MutM ; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3’- and 5’-phosphates (283 aa)
     
      0.501
R2601_14715
Chromosome partitioning protein parB (303 aa)
   
   
  0.491
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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