STRINGSTRING
R2601_09038 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_09038" - CpaB family protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_09038CpaB family protein (286 aa)    
Predicted Functional Partners:
R2601_09043
Bacterial type II/III secretion system protein (471 aa)
 
   
  0.947
R2601_09058
Type II/IV secretion system protein, TadA subfamily (489 aa)
 
   
  0.932
R2601_09053
ATPase, putative (410 aa)
 
   
  0.927
R2601_09063
Type II/IV secretion system protein, TadC subfamily (321 aa)
 
   
  0.921
R2601_09068
Putative Flp pilus assembly protein TadC (323 aa)
 
   
  0.919
R2601_09093
Uncharacterized protein (434 aa)
 
          0.887
R2601_09078
Lipoprotein, putative (286 aa)
 
          0.816
R2601_09073
TPR domain protein (185 aa)
 
          0.678
R2601_09028
Uncharacterized protein (61 aa)
 
          0.655
R2601_09048
OmpA family protein (221 aa)
 
          0.631
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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