STRINGSTRING
R2601_09113 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_09113" - Transcriptional regulator in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_09113Transcriptional regulator (398 aa)    
Predicted Functional Partners:
R2601_09118
Uncharacterized protein (143 aa)
 
          0.971
R2601_09108
Uncharacterized protein (362 aa)
 
        0.864
R2601_19884
Uncharacterized protein (117 aa)
 
          0.801
R2601_08386
MFS permease (395 aa)
   
          0.769
R2601_19894
Membrane protein (316 aa)
 
        0.718
R2601_02253
Transcriptional regulatory protein (297 aa)
 
        0.706
R2601_19869
Probable transcription regulator protein (298 aa)
 
        0.668
R2601_02248
Conserved hypothetical signal peptide protein (296 aa)
 
          0.628
R2601_19834
Aldo/keto reductase (286 aa)
   
        0.523
R2601_09123
Probable glutathione S-transferase family protein (204 aa)
              0.474
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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