STRINGSTRING
R2601_09375 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_09375" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_09375Uncharacterized protein (154 aa)    
Predicted Functional Partners:
murA
UDP-N-acetylglucosamine enolpyruvyl transferase ; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine (423 aa)
 
          0.927
R2601_09385
Uncharacterized protein (52 aa)
              0.859
R2601_09355
UPF0262 protein R2601_09355 (159 aa)
 
          0.846
R2601_10879
Uncharacterized protein (71 aa)
   
          0.737
R2601_21206
Uncharacterized protein (64 aa)
   
          0.727
R2601_09350
Arsenate reductase (148 aa)
 
          0.691
R2601_08421
Putative phage tail minor protein (220 aa)
   
          0.632
R2601_13840
Putative transmembrane protein (108 aa)
   
          0.625
R2601_21276
Uncharacterized protein (84 aa)
   
          0.609
R2601_19437
Uncharacterized protein (165 aa)
   
          0.596
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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