STRINGSTRING
crcB protein (Pelagibaca bermudensis) - STRING interaction network
"crcB" - Putative fluoride ion transporter CrcB in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
crcBPutative fluoride ion transporter CrcB ; Important for reducing fluoride concentration in the cell, thus reducing its toxicity (125 aa)    
Predicted Functional Partners:
R2601_09527
HAD-superfamily hydrolase, subfamily IA, variant 1 (225 aa)
     
      0.942
R2601_09522
Pseudouridine synthase ; Responsible for synthesis of pseudouridine from uracil (350 aa)
   
        0.889
R2601_09532
Uncharacterized protein (237 aa)
              0.887
tsaD
tRNA threonylcarbamoyladenosine biosynthesis protein TsaD ; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction (359 aa)
     
      0.784
R2601_22322
Phosphoglycolate phosphatase (220 aa)
     
      0.605
R2601_21351
HAD-superfamily hydrolase, subfamily IA, variant 1 family protein (232 aa)
     
      0.605
R2601_17364
Phosphoglycolate phosphatase ; Specifically catalyzes the dephosphorylation of 2- phosphoglycolate (225 aa)
     
      0.605
R2601_09512
ABC transporter ATP-binding protein (341 aa)
              0.549
R2601_09507
Uncharacterized protein (408 aa)
              0.536
R2601_09502
Putative integral membrane binding protein dependent transport protein (407 aa)
              0.536
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
Server load: low (8%) [HD]