STRINGSTRING
R2601_09617 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_09617" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_09617Uncharacterized protein (206 aa)    
Predicted Functional Partners:
R2601_26331
Transporter, AcrB/AcrD/AcrF family protein (1236 aa)
   
          0.614
R2601_13739
Uncharacterized protein (95 aa)
   
          0.597
R2601_13890
Efflux transporter, RND family, MFP subunit (487 aa)
   
          0.592
R2601_08301
Uncharacterized protein (236 aa)
   
          0.592
R2601_12885
Uncharacterized protein (110 aa)
   
          0.591
R2601_10799
Uncharacterized protein (106 aa)
   
          0.547
R2601_10484
Uncharacterized protein (163 aa)
   
          0.537
R2601_10739
Transglutaminase-like protein (258 aa)
   
          0.520
R2601_18508
Uncharacterized protein (101 aa)
   
          0.495
R2601_09622
Uncharacterized protein (264 aa)
              0.471
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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