STRINGSTRING
xerC protein (Pelagibaca bermudensis) - STRING interaction network
"xerC" - Tyrosine recombinase XerC in Pelagibaca bermudensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xerCTyrosine recombinase XerC (308 aa)    
Predicted Functional Partners:
R2601_09797
Uncharacterized protein (237 aa)
              0.887
R2601_07568
No annotation available (409 aa)
   
          0.719
R2601_06313
No annotation available (409 aa)
   
          0.719
R2601_00605
Putative integrase (409 aa)
   
          0.719
priA
ATP-dependent helicase PriA ; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA (729 aa)
 
        0.615
recR
Recombination protein RecR ; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO (197 aa)
   
   
  0.598
R2601_09807
Glutathione S-transferase (201 aa)
              0.556
R2601_14710
Chromosome partitioning protein ParA (269 aa)
 
   
  0.552
xseA
Exodeoxyribonuclease VII large subunit ; Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides (510 aa)
 
      0.547
R2601_16695
FtsK/SpoIIIE family protein (1137 aa)
 
     
  0.544
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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