STRINGSTRING
R2601_09872 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_09872" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_09872Uncharacterized protein (292 aa)    
Predicted Functional Partners:
R2601_09867
Methyl-accepting chemotaxis protein McpC (622 aa)
              0.623
R2601_14650
Transporter, Tim44 family protein (219 aa)
   
          0.525
R2601_24200
CvpA family protein (190 aa)
   
          0.469
R2601_13835
AzlC family protein (234 aa)
 
          0.445
R2601_24514
Acyl carrier protein, putative (80 aa)
   
          0.445
R2601_09877
Methyltransferase (367 aa)
              0.443
R2601_12900
Pyruvate dehydrogenase complex repressor (256 aa)
   
          0.438
R2601_10879
Uncharacterized protein (71 aa)
   
          0.433
R2601_18278
Uncharacterized protein (341 aa)
   
          0.420
R2601_24245
Replicative DNA helicase ; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins (494 aa)
   
          0.414
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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