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R2601_09957 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_09957" - Lipolytic enzyme in Pelagibaca bermudensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_09957Lipolytic enzyme (299 aa)    
Predicted Functional Partners:
gshB
Glutathione synthase (311 aa)
              0.866
R2601_21406
Cyclohexanone monooxygenase (543 aa)
 
    0.854
R2601_14750
NADP-dependent malic enzyme (751 aa)
   
 
    0.818
R2601_10082
Malic enzyme (759 aa)
   
 
    0.818
R2601_05538
Esterase/lipase/thioesterase (303 aa)
   
 
 
0.724
R2601_09967
UPF0102 protein R2601_09967 (153 aa)
              0.674
rsmI
rRNA (cytidine-2’-O-)-methyltransferase RsmI ; Catalyzes the 2’-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA (278 aa)
   
        0.635
R2601_21041
Alkane-1 monooxygenase, putative (343 aa)
   
          0.561
R2601_18023
Putative transcriptional regulator (223 aa)
 
   
    0.550
R2601_20641
Acyl-CoA synthase (528 aa)
   
 
  0.534
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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