STRINGSTRING
R2601_09987 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_09987" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_09987Uncharacterized protein (143 aa)    
Predicted Functional Partners:
R2601_18388
Sulfur oxidation B protein (565 aa)
 
          0.685
R2601_18393
Sulfur oxidation molybdopterin C protein (425 aa)
 
          0.561
R2601_01738
TRAP dicarboxylate family transporter, DctP subunit (340 aa)
   
          0.532
tatA
Sec-independent protein translocase protein TatA ; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system (72 aa)
   
          0.529
R2601_18373
Sulfur oxidation protein SoxY (139 aa)
 
          0.526
R2601_09977
Uncharacterized protein (396 aa)
 
          0.523
R2601_02223
P-450 monoxygenase (391 aa)
   
          0.487
R2601_01733
TRAP-type mannitol/chloroaromatic compound transport system, small permease component (173 aa)
   
          0.464
R2601_15802
Putative transposase (80 aa)
   
          0.454
glnD
Bifunctional nitrogen sensor protein ; Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen metabolism (915 aa)
              0.442
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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