STRINGSTRING
R2601_10047 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_10047" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_10047Uncharacterized protein (320 aa)    
Predicted Functional Partners:
R2601_18960
Uncharacterized protein (132 aa)
   
          0.749
R2601_15532
Core-2/I-branching enzyme family protein (566 aa)
   
          0.669
R2601_27171
Uncharacterized protein (336 aa)
   
          0.661
R2601_09088
GDSL-like lipase/acylhydrolase, putative (233 aa)
   
          0.641
R2601_15527
Uncharacterized protein (475 aa)
   
          0.633
R2601_23338
Uncharacterized protein (198 aa)
   
          0.627
R2601_13229
Uncharacterized protein (257 aa)
   
          0.615
R2601_11284
Uncharacterized protein (760 aa)
   
          0.609
R2601_19260
Uncharacterized protein (150 aa)
   
          0.593
R2601_08761
Lipoprotein, putative (101 aa)
   
          0.591
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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